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Publication of Dr. Aditya Kumar

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Publication

  1. Sganzerla Martinez, G., Perez-Rueda, E., Kumar, A., Sarkar, S., & de Avila e Silva, S., Explainable artificial intelligence as a reliable annotator of archaeal promoter regions., Scientific Reports, 13(1), 1763, 2023, 4, Click Here (DOI)
  2. Bhuyan, S., Yadav, M., Giri, S. J., Begum, S., Das, S., Phukan, A., Priyadarshani, P., Sarkar, S., Jayswal, A., Kabyashree, K., Kumar, A., Mandal, M., & Ray, S. K., Microliter spotting and micro-colony observation: A rapid and simple approach for counting bacterial colony forming units., Journal of Microbiological Methods, 207(March), 106707, 2023, 3, Click Here (DOI)
  3. Patra, D., Roy, S., Arora, L., Kabeer, S. W., Singh, S., Dey, U., Banerjee, D., Sinha, A., Dasgupta, S., Tikoo, K., Kumar, A., & Pal, D., miR-210-3p Promotes Obesity-Induced Adipose Tissue Inflammation and Insulin Resistance by Targeting SOCS1-Mediated NF-κB Pathway., Diabetes, 72(3), 375–388, 2023, 9, Click Here (DOI)
  4. Dey, U., Olymon, K., Banik, A., Abbas, E., Yella, V. R., & Kumar, A., DNA structural properties of DNA binding sites for 21 transcription factors in the mycobacterial genome., Frontiers in Cellular and Infection Microbiology, 13(June), 1147544, 2023, 6, Click Here (DOI)
  5. Mohit Yadav, Sharmilee Sarkar, Kaushika Olymon, Suvendra Kumar Ray & Aditya Kumar, Combined In Silico and In Vitro Study to Reveal the Structural Insights and Nucleotide-Binding Ability of the Transcriptional Regulator PehR from the Phytopathogen Ralstonia solanacearum, ACS Omega, Volume 8, Issue 38 Pages 34196-35441, 2023, 4.132, Click Here (DOI)
  6. Martinez, G. S., Pérez-Rueda, E., Sarkar, S., Kumar, A., & de Ávila E Silva, S., Machine learning and statistics shape a novel path in archaeal promoter annotation., BMC Bioinformatics, 23(1), 171, 2022, 23(1), 171, Click Here (DOI)
  7. Kari, H., Bandi, S. M. S., Kumar, A., & Yella, V. R., DeePromClass: Delineator for Eukaryotic Core Promoters employing Deep Neural Networks., IEEE/ACM Transactions on Computational Biology and Bioinformatics, PP(c), 1–8, 2022, PP(c), 1–8, Click Here (DOI)
  8. Devi, Y. D., Dey, U., Kumar, A., Singh, C. S., & Namsa, N. D., Genome Sequence of a Wa-Like G3P[8] Rotavirus from a 12-Month-Old Child with Diarrhea in Manipur, Microbiology Resource Announcements, 2(10), e0125421, 2022, 2, Click Here (DOI)
  9. Singh, P. K., Singh, J., Medhi, T., & Kumar, A., Phytochemical Screening, Quantification, FT-IR Analysis, and In Silico Characterization of Potential Bio-active Compounds Identified in HR-LC/MS Analysis of the Polyherbal Formulation from Northeast India., ACS Omega, 7(37), 33067–33078, 2022, 7(37), 33067–33078, Click Here (DOI)
  10. G.S. Martinez, S. Sarkar, A. Kumar, E. Perez-Rueda, S. de Avila e Silva, Characterization of promoters in archaeal genomes based on DNA structural parameters, MicrobiologyOpen, 10(5), 2021, 10(5), Click Here (DOI)
  11. Y. D. Devi, H.B. Goswami, S. Konwar, C. Doley, A. Dolley, A. Devi, C. Chongtham, D. Dowerah, V. Biswa, L. Jamir, A. Kumar, S.S. Satapathy, S.K. Ray, R.C. Deka, R. Dolley, M. Mandal, S. Das, C.S. Singh, P.P. Borah, N.D. Namsa, Immunoinformatics mapping of potential epitopes in SARS-CoV-2 structural proteins., Plos One, 16(11), 2021, 3.57, Click Here (DOI)
  12. S. Sarkar, U. Dey, T.B. Khohliwe, V.R. Yella, A. Kumar, Analysis of nucleoid-associated protein-binding regions reveal DNA structural features influencing genome organisation in Mycobacterium tuberculosis, FEBS Letters, 19(1-18), 2021, 3.288, Click Here (DOI)
  13. Akkinepally Vanaja, Sarada Prasanna Mallick, Umasankar Kulandaivelu, Aditya Kumar, Venkata Rajesh Yella, Symphony of the DNA flexibility and sequence environment orchestrates p53 binding to its responsive elements, Gene, 803, 2021, 803, Click Here (DOI)
  14. Upalabdha Dey, Sharmilee Sarkar, Valentina Teronpi, Venkata Rajesh Yella, Aditya Kumar*, G-quadruplex motifs are functionally conserved in cis-regulatory regions of pathogenic bacteria: An in-silico evaluation., Biochimie, 184(40-51), 2021, 184(40-51), Click Here (DOI)
  15. Chayanika Chaliha, V Chandra Kaladhar, Robin Doley, Praveen Kumar Verma, Aditya Kumar and Eeshan Kalita, Bipartite molecular approach for species delimitation and resolving cryptic speciation of Exobasidium vexans within the Exobasidium genus., Computational biology and chemistry, 92 (107496), 2021, 92 (107496), Click Here (DOI)
  16. Gustavo Sganzerla Martinez, Scheila de Ávila e Silva, Aditya Kumar and Ernesto Pérez-Rueda, DNA structural and physical properties reveal peculiarities in promoter sequences of the bacterium Escherichia coli K-12, SN Applied Sciences, 3 8 (740), 2021, 0, Click Here (DOI)
  17. Venkata Rajesh Yella*, Akkinepally Vanaja, Umasankar Kulandaivelu and Aditya Kumar*, Delving into Eukaryotic Origins of Replication Using DNA Structural Features, ACS Omega, 5(23):13601–13611, 2020, 5(23):13601–13611, Click Here (DOI)
  18. Venkata Rajesh Yella, Aditya Kumar and Manju Bansal, Identification of putative promoters in 48 eukaryotic genomes on the basis of DNA free energy, Scientific Reports, 4520, 2018, 4520, Click Here (DOI)
  19. Aditya Kumar and Manju Bansal, Unveiling DNA structural features of promoters associated with various types of TSSs in prokaryotic transcriptomes and their role in gene expression, DNA Research, 24(1):25-35, 2017, 24(1):25-35, Click Here (DOI)
  20. Aditya Kumar Vasumathi Manivelan and Manju Bansal, Structural features of DNA are conserved in the promoter region of orthologous genes across different strains of Helicobacter pylori, FEMS Microbiology Letters, , 363, 2016, 363, Click Here (DOI)
  21. Manju Bansal, Aditya Kumar and Venkata Rajesh Yella, Role of DNA sequence based structural features of promoters in transcription initiation and gene expression, Current Opinion in Structural Biology, 25(C):77-85, 2014, 25(C):77-85, Click Here (DOI)
  22. Aditya Kumar and Manju Bansal, Characterization of structural and free energy properties of promoters associated with Primary and Operon TSS in Helicobacter pylori genome and their orthologs, Journal of Biosciences, 37(3):423-431, 2012, 37(3):423-431, Click Here (DOI)
  23. B.R. Powdel, Siddhartha Sankar Satapathy, Aditya Kumar, Pankaj Kumar Jha, Alak Kumar Buragohain, Munindra Borah and Suvendra Kumar Ray, A study in entire chromosomes of violations of the intra-strand parity of complementary nucleotides (Chargaff’s second parity rule), DNA Research, 16(6):325-343, 2009, 16(6):325-343, Click Here (DOI)