KRISHI

HTML tutorial

A pathway is a series of actions among molecules in a cell that leads to a certain product or a change in the cell [National Institutes of Health (NIH)]. Host organisms regulate particular pathways by turning on/off genes in them leading to desired responses against pathogens. The pathways tab houses a unique collection of the key biological pathways that get triggered in rice plant on Rhizoctonia solani (R. solani) infection. Each differentially regulated molecule was handpicked from available scientific literatures, knowledge integrated and mapped to their respective KEGG pathways. Users can visualize and download the pathways and their respective genes that were found to be differentially regulated in rice plant on R. solani infection all under a single window. Both static and dynamic (node flexible) pathway files are provided for better visualization and understanding. Here, molecules coloured in yellow represents evidence of down-regulation, red represents evidence of up-regulation and orange represents evidence of both up and down regulation under infection condition.

Alfa Linolenic Acid Metabolism

Cinque Terre

Cinque Terre

Plant Pathogen Interaction

Cinque Terre

Cinque Terre

Citrate Cycle (TCA)

Cinque Terre

Cinque Terre

Phenylpropanoid Biosynthesis

Cinque Terre

Cinque Terre

MAPK Signaling Pathway Plant

Cinque Terre

Cinque Terre

Glycolysis

Cinque Terre

Cinque Terre

Pentose Phosphate Pathway

Cinque Terre

Cinque Terre

Carbon Fixation in Photosynthetic organisms

Cinque Terre

Cinque Terre

Glyoxylate and Dicarboxylate Metabolism

Cinque Terre

Cinque Terre

Phenylalanine, Tyrosine and Tryptophan Biosynthesis

Cinque Terre

Cinque Terre

References:

Danson, J., Wasano, K., & Nose, A. (2000). Infection of rice plants with the sheath blight fungus causes an activation of pentose phosphate and glycolytic pathways. European journal of plant pathology, 106(6), 555-561.
Ghosh, S., Kanwar, P., & Jha, G. (2017). Alterations in rice chloroplast integrity, photosynthesis and metabolome associated with pathogenesis of Rhizoctonia solani. Scientific reports, 7(1), 1-12.
Karmakar, S., Datta, K., Molla, K. A., Gayen, D., Das, K., Sarkar, S. N., & Datta, S. K. (2019). Proteo-metabolomic investigation of transgenic rice unravels metabolic alterations and accumulation of novel proteins potentially involved in defence against Rhizoctonia solani. Scientific reports, 9(1), 1-16.
Mutuku, M., & Nose, A. (2010). Rhizoctonia solani infection in two rice lines increases mRNA expression of metabolic enzyme genes in glycolytic, oxidative pentose phosphate pathways and secondary metabolism. Tropical Agriculture and Development, 54(4), 119-131.
Mutuku, J. M., & Nose, A. (2012). Changes in the contents of metabolites and enzyme activities in rice plants responding to Rhizoctonia solani Kuhn infection: activation of glycolysis and connection to phenylpropanoid pathway. Plant and Cell Physiology, 53(6), 1017-1032..
Sayari, M., Babaeizad, V., Ghanbari, M. A. T., & Rahimian, H. (2014). Expression of the pathogenesis related proteins, NH-1, PAL, and lipoxygenase in the iranian Tarom and Khazar rice cultivars, in reaction to Rhizoctonia solani–the causal agent of rice sheath blight. Journal of Plant Protection Research, 54(1).
Shi, W., Zhao, S. L., Liu, K., Sun, Y. B., Ni, Z. B., Zhang, G. Y., ... & Zhu, G. Y. (2020). Comparison of leaf transcriptome in response to Rhizoctonia solani infection between resistant and susceptible rice cultivars. BMC genomics, 21(1), 1-16.
Taheri, P., & Tarighi, S. (2010). Riboflavin induces resistance in rice against Rhizoctonia solani via jasmonate-mediated priming of phenylpropanoid pathway. Journal of plant physiology, 167(3), 201-208.
Zhang, J., Chen, L., Fu, C., Wang, L., Liu, H., Cheng, Y., ... & Zheng, A. (2017). Comparative transcriptome analyses of gene expression changes triggered by Rhizoctonia solani AG1 IA infection in resistant and susceptible rice varieties. Frontiers in plant science, 8, 1422.

This website is Copyright © protected. All rights reserved.