DEPARTMENT OF MOLECULAR BIOLOGY AND BIOTECHNOLOGY MOLECULAR MODELLING AND SIMULATION LABORATORY

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RESEARCH PUBLICATIONS (2008-2019)

52. Rajat Anand, Manish Agrawal, Venkata Satish Kumar Mattaparthi, Rajaram Swaminathan, and Sitangshu Bikas Santra (2019). Consequences of Heterogeneous Crowding on an Enzymatic Reaction: A Residence Time Monte Carlo Approach. ACS Omega, 4, pp: 727–736.

51. Sushmita Pradhan, Pundarikaksha Das and Venkata Satish Kumar Mattaparthi (2018). Characterizing the Binding Interactions between DNA-Binding Proteins, XPA and XPE: A Molecular Dynamics Approach. ACS Omega, 3, Pp: 15442−15454

50. Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2018). Computational Study on the Role of γ-Synuclein in Inhibiting the α-Synuclein Aggregation. Central Nervous System Agents in Medicinal Chemistry, 19, 24-30. DOI:10.2174/1871524918666181012160439

49. Sushmita Pradhan, Himakshi Sarma and Venkata Satish Kumar Mattaparthi (2018). Investigation of the probable homo-dimer model of the Xeroderma pigmentosum complementation group A (XPA) protein to represent the DNA binding core. Journal of Biomolecular Structure and Dynamics, 1-15. doi: 10.1080/07391102.2018.1517051

48. Himakshi Sarma and Venkata Satish Kumar Mattaparthi (2018). Structure based virtual screening of high-affinity ATP competitive inhibitors against Human Lemur Tyrosine Kinase-3 (LMTK3) domain- a novel therapeutic target for breast cancer. Interdisciplinary Sciences computational life sciences. doi: 10.1007/s12539-018-0302-7

47. Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2018). Effect of C-terminal truncations on the aggregation propensity of A53E, a familial mutant of α-Synuclein: An In silico Study. International Journal for Computational Biology (IJCB), 7, 16-28.

46.Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2018). Dimerization of C-terminal truncations of α-synuclein and its effect on the aggregation propensity: A Potential of Mean Force Study. Current Chemical Biology (Recently Accepted).

45.Himakshi Sarma and Venkata Satish Kumar Mattaparthi (2018). Salient Structural Features of Human Lemur Tyrosine Kinase 3 (LMTK3) Domain from Molecular Dynamics Simulation Study. Current Biotechnology, 7. DOI : 10.2174/2213529404666180125161856

44.Mary Dutta and Venkata Satish Kumar Mattaparthi (2017). A comparative study to elucidate the inhibitory mechanism of a 6-mer fragment of Amyloid-β42 peptide as a potential therapeutic in Alzheimer’s disease: insights from molecular dynamics simulations. Current Science, Accepted on  20th November, 2017

43.Sushmita Pradhan and Venkata Satish Kumar Mattaparthi (2017). Structural Dynamics and Interactions of Xeroderma Pigmentosum complementation group A (XPA98-210) with Damaged DNA. Journal of Biomolecular Structure & Dynamics. DOI: 10.1080/07391102.2017.1388285.

42.Himakshi Sarma and Venkata Satish Kumar Mattaparthi (2017). Unveiling the Transient Protein-Protein Interactions that Regulate the Activity of Human Lemur Tyrosine Kinase-3 (LMTK3) Domain by Cyclin-Dependent Kinase 5 (CDK5) in Breast Cancer: An in silico Study. Current Proteomics, 14(4), 1-9. DOI : 10.2174/1570164614666170726160314.

41.Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2017). Effect of C-terminal truncations on the aggregation propensity of α-Synuclein-A Potential of Mean Force Study. Journal of Molecular Imaging and Dynamics, 7:1. DOI: 10.4172/2155-9937.1000132

40.Sushmita Pradhan, Himakshi Sarma, Barsha Bharadwaz and Venkata Satish Kumar Mattaparthi (2017). Comparative study on the binding affinity of Methimazole and Propylthiouracil to Thyroid Peroxidase as an anti-thyroid drug: An in-silico approach. Journal of Molecular Imaging and Dynamics, 7:1. DOI: 10.4172/2155-9937.1000131

39.Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2017). Computational investigation on the effects of H50Q and G51D mutations on the α-Synuclein aggregation propensity. Journal of Biomolecular Structure & Dynamics, 1-13. DOI: 10.1080/07391102.2017.1347060.

38.Himakshi Sarma and Venkata Satish Kumar Mattaparthi (2017). Effect of activation loop phosphorylation on Lemur Tyrosine Kinase 3 (LMTK3) activity: A Molecular Dynamics Simulation Study. Biological Forum-An International Journal, 9(1), 194-206.

37.Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2017). Effect of Structural heterogeneity of α-Synuclein mutants on the aggregation propensity. International Journal of Current Research, 9(7), 53448-53456.

36.Vinod Kumar Yata, Shweta Mahajan, Arun Thapa, Shadab Ahmed, Akash Deep Biswas, Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2017). In silico methods reconfirm CDk2 as a potential molecular target of 5-flurouracil. Indian Journal of Biochemistry and Biophysics Vol.53,199-205.

35.Mary Dutta, Rajkalyan Chutia and Venkata Satish Kumar Mattaparthi (2017). Structural Characterization of Amyloid β17-42 Dimer by potential of mean force analysis: Insights from Molecular Dynamics Simulations. Protein and Peptide Letters, 24(7) : 650-660. doi: 10.2174/0929866524666170621095702.

34.Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2017). Potential of Mean Force study on the dimerization of non-amyloid-β component of Human α-Synuclein. International Journal for Computational Biology (IJCB), 6, 7-17.

33.Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2017). Computational Investigation on the molecular interactions stabilizing the structure of α-Synuclein fibril. Central Nervous System Agents in Medicinal Chemistry, 17. DOI: 10.2174/1871524917666170427152849

32.Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2017). Effect of Tyrosine to Alanine mutation on the dimerization process of α-Synuclein: A Potential of Mean Force study. Biological Forum: an International Journal, 9(1), 1-8.

31.Mary Dutta and Venkata Satish Kumar Mattaparthi (2017). In silico investigation on the inhibition of Aβ42 aggregation by Aβ40 peptide by potential of mean force study. Journal of Biomolecular Structure and Dynamics, 1-12. DOI: 10.1080/07391102.2017.1296783

30.Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2017). Computational investigation on the inter-molecular interactions between α-Synuclein fibrils and Tau protein, propagating Tau aggregation. Current Science, 112, 11. DOI: 10.18520/cs/v112/i11/2219-2225

29.Himakshi Sarma and Venkata Satish Kumar Mattaparthi (2016). Unveiling the transient Protein-Protein interactions that modulate the activity of Estrogen Receptor(ER)-α by Human Lemur Tyrosine Kinase-3 (LMTK3) domain: An in silico study. Current Proteomics, 14, 157-164. DOI: 10.2174/1570164614666161206164330

28.Airy Sanjeev and Venkata Satish Kumar Mattaparthi (2016). Computational Investigation on Tyrosine to Alanine Mutations Delaying the Early Stage of α-Synuclein Aggregation. Current Proteomics, 14, 31-41. DOI: 10.2174/1570164614666161206143325

27.Airy Sanjeev, Ravi Kumar Sahu, and Venkata Satish Kumar Mattaparthi (2016). Potential of Mean Force and Molecular Dynamics study on the transient interactions between α and β synuclein that drive inhibition of α-synuclein aggregation. Journal of Biomolecular Structure and Dynamics, 1-12. DOI: 10.1080/07391102.2016.1254119

26.Nazneen Hussain, Archana Singh, Sougata Saha, Kumar, Venkata Satish Kumar Mattaparthi, P Bhattacharya and Satya Sundra Bhattacharya (2016). Excellent N-fixing and P-solubilizing traits in earthworm gut-isolated bacteria: A vermicompost based assessment with vegetable market waste and rice straw feed mixtures. Bioresource Technology, 222, 165-174.

25.Mary Dutta, Rajkalyan Chutia and Venkata Satish Kumar Mattaparthi (2016). Cross-seeding interaction between Amyloid β and Tau protein can enhance aggregation. Current Biotechnology Journal, 5. DOI: 10.2174/2211550105666160826151858

24.Mary Dutta, Ankita Deb and Venkata Satish Kumar Mattaparthi (2016). Investigations on the Structural Characteristics that Seed the Aggregation of Amyloid-1-42 Peptide: Insights from Molecular Dynamics Simulations, Current Proteomics, 2016, Vol. 13, No. 2, 172-178. DOI: 10.2174/1570164613999160831110617

23.Mary Dutta and Venkata Satish Kumar Mattaparthi (2016). Inhibition of Aβ_1-42 Peptide aggregation using short ss-oligonucleotide as polyions: An in silico approach. Journal of Biomolecular Structure and Dynamics, 35, 1401-1406. DOI: 10.1080/07391102.2016.1189358.

22.Akash Deep Biswas, Sujata Dev and Venkata Satish Kumar Mattaparthi (2016).Characterization of the structure of Anopheles gambiae Odorant Receptor 1 (AgOR1) and its binding affinity with novel inhibitors and phytochemicals: A Molecular Dynamics and Docking Approach. International Journal of Innovations in Engineering and Technology, Volume 6, Issue 4, Page No. 624-641

21.Maitreyee Sharma, Janaki Krishnamurthy Iyer, Norrapat Shih, Munmi Majumder, Venkata Satish Kumar Mattaparthi, Rupak Mukhopadhyay and Robin Doley (2016). Daboxin P, a Major Phospholipase A2 Enzyme from the Indian Daboia russelii russelii Venom Targets Factor X and FactorXa for Its Anticoagulant Activity. PLoS ONE 11(4): e0153770. DOI:10.1371/journal.pone.0153770.

20.Bandana Bora, Akash Deep Biswas, Arun Bahadur Gurung, Atanu Bhattacharjee, Venkata Satish Kumar Mattaparthi and Ashis K. Mukherjee (2016). An insilico approach to understand the structure-function properties of a serine protease (Bacifrinase) from Bacillus cereus and experimental evidence to support the interaction of Bacifrinase with fibrinogen and thrombin. Journal of Biomolecular Structure and Dynamics, 35, 622-644. DOI: 10.1080/07391102.2016.1158665.

19.Mary Dutta and Venkata Satish Kumar Mattaparthi (2015). Inhibition of Aβ aggregation in Alzheimer disease using the poly-ion short single stranded DNA: an in silico study. Journal of Biomolecular Structure and Dynamics, 33: supl, 27-27, DOI: 10.1080/07391102.2015.1032588.

18.Mary Dutta and Venkata Satish Kumar Mattaparthi (2015).Inhibition of amyloid fibrils formation as well as disassembly of amyloid fibrils in Alzheimer disease using the poly-ion, single stranded nucleotide sequence: an in silico study. Journal of Proteins and Proteomics, Volume 6, Number 1. ( Special issue on Biophysics in India)

17.Vinod Kumar Prajapati, Siddhartha Sankar Satapathy, Venkata Satish Kumar Mattaparthi, Alak Kumar Buragohain and Suvendra Kumar Ray (2015). Evidences Indicating the Involvement of Selection Mechanisms for the Occurrence of C34 Anticodon in Bacteria. Journal of Cell Science & Molecular Biology, Volume 2(1), Page No. 112.

16.Venkata Satish Kumar Mattaparthi, Aditya Iyer and Rajaram Swaminathan (2015). Crowding by specific size of Dextran switches the substrate specificity of acetylcholinesterase enzyme. Journal of Proteins and Proteomics, Volume 6, Number 1. ( Special issue on Biophysics in India)

15.Tarak Mandal, Venkata Satish Kumar Mattaparthi and Prabal K Maiti (2014). DNA assisted self-assembly of PAMAM dendrimers. Journal of Physical Chemistry B, Vol 118 (40), 11805-15, DOI: 10.1021/jp504175f. Epub 2014 Sep 26.

14.Vinod Kumar Yata, Arun Thapa and Venkata Satish Kumar Mattaparthi (2014). Structural insight into the binding interactions of modelled structure of Arabidopsis thaliana urease with urea: An In silico study. Journal of Biomolecular Structure and Dynamics (Accepted on 12^th April 2014), DOI:10.1080/07391102.2014.915765.

13.Biswa Ranjan Meher, Venkata Satish Kumar Mattaparthi and Pradipta Bandyopadhyay (2014). Inter-chain hydrophobic clustering promotes rigidity in HIV-1 protease flap dynamics: New insights from Molecular Dynamics. Journal of Biomolecular Structure & Dynamics, Volume 32, Issue 6, 899-915. DOI:10.1080/07391102.2013.795873.

12.Tasneem Ali, Venkata Satish Kumar Mattaparthi, Saurabh Basu and Rajaram Swaminathan (2014). MD Simulation Trajectories of Multiple Intrinsically Disordered Proteins reveal order to disorder transitions that bear functional significance. Biophysical Journal, 2014, 106(2), 484a.

11.Venkata Satish Kumar Mattaparthi and Rajaram Swaminathan (2013). Human Lysozyme Amyloidosis: MD Simulations Reveal Increased Structural Destabilization in Disease causing Mutants Compared to Wildtype. Biophysical Journal, Vol 104, issue 2, Supplement 1, Pages 387a. 29^th January 2013.

10.B.R. Meher, Venkata Satish Kumar Mattaparthi, Smriti Sharma and Pradipta Bandhyopadhyay (2012). Conformational dynamics of HIV-1 Protease: A comparative molecular dynamics simulation study with multiple AMBER force fields. Journal of Bioinformatics and Computational Biology, Vol. 10(6), art. No.1250018.

9. Vishal Maingi, Venkata Satish Kumar Mattaparthi and Prabal K Maiti (2012). PAMAM Dendrimer-Drug Interactions: Effect of pH on the Binding and Release Pattern. Journal of Physical Chemistry B, Vol. 116(14), pp. 4370-4376.

8. Venkata Satish Kumar Mattaparthi and Prabal K Maiti (2012). Structure of DNA functionalized Dendrimer Nanoparticles. Soft Matter, Vol. 8(6), 1893-1900.

7. Vinod Kumar Yata, Kausik Sen, Venkata Satish Kumar Mattaparthi and Siddhartha Sankar Ghosh (2012). Interaction studies of E.coli Uracil Phosphoribosyltransferase with 5-fluoro uracil for potent anti-cancer activity. Journal of Medicinal Chemistry Research, Vol. 21(7), pp. 1149-1155.

6. Venkata Satish Kumar Mattaparthi and Rajaram Swaminathan (2011). MD Simulations Highlight the Contrast in Dynamics of Intrinsically Disordered Proteins When Compared with Folded Proteins. Biophysical Journal, 100(3), 2 February 2011.

5. Rajaram Swaminathan, Vijay Kumar Ravi, Satish Kumar, Venkata Satish Kumar Mattaparthi and Nividh Chandra (2011). Lysozyme: A Model Protein for Amyloid Research. In Advances in Protein Chemistry and Structural Biology, Vol. 84, Protein Aggregation, Rossen Donev (Editor) Academic Press, 2011, pp. 63-111. ISBN: 978-0-12-386483-3.

4. Venkata Satish Kumar Mattaparthi and Rajaram Swaminathan (2010). A novel approach to segregate and identify functional loop regions in protein structures using their Ramachandran maps. Proteins: Structure, Function and Bioinformatics, Vol. 78(4), pp. 900-916.

3. Venkata Satish Kumar Mattaparthi and Rajaram Swaminathan (2010). An automated approach to segregate and identify functional or disordered loop regions in protein structures using their Ramachandran Maps. Biophysical Journal, 98(3), 455a.

2. B.R. Meher, Venkata Satish Kumar Mattaparthi and Pradipta Bandyopadhyay (2009). Molecular dynamics simulation of HIV-protease with polarizable and non-polarizable force fields. Indian J. Phys. 83 (1) 77-86.

1. B.R. Meher, Venkata Satish Kumar Mattaparthi and Kausik Sen (2008). Pressure induced conformational dynamics of HIV-1 protease: A Molecular Dynamics simulation study. International Conference on Information Technology, DOI:10.1109/ICIT.2008.39.

BOOK CHAPTERS (2008-2018)

1. Biswa R Meher, Venkata Satish Kumar Mattaparthi, Seema Patel and Sandeep Kaushik (2018). Mutation effects on 3D-structural reorganization using HIV-1 protease as a case study. Encyclopedia of Bioinformatics and Computational Biology.

2. Airy Sanjeev, Sandeep Kaushik, Biswa R Meher and Venkata Satish Kumar Mattaparthi  (2018). Disorder in Proteins. In: Reference Module in Life Sciences, Elsevier, 2018, ISBN: 978-0-12-809633-8, http://dx.doi.org/10.1016/B978-0-12-809633-8.20271-9.

3. Airy Sanjeev, Venkata Satish Kumar Mattaparthi and Sandeep Kaushik (2018). Nucleic-acid Structure Databases. Encyclopedia of Bioinformatics and Computational Biology.

4. Himakshi Sarma, Sushmita Pradhan, Sandeep Kaushik and Venkata Satish Kumar Mattaparthi (2018). Phylogenetic analysis: Early evolution of life. Encyclopedia of Bioinformatics and Computational Biology.

5. Rajaram Swaminathan, Vijay Kumar Ravi, Satish Kumar, Venkata Satish Kumar Mattaparthi and Nividh Chandra (2011). Lysozyme: A Model Protein for Amyloid Research. In Advances in Protein Chemistry and Structural Biology, Vol. 84, Protein Aggregation, Rossen Donev (Editor) Academic Press, 2011, pp. 63-111. ISBN: 978-0-12-386483-3.

CONFERENCE PRESENTATIONS/PROCEEDINGS:

1. Himakshi Sarma and Venkata Satish Kumar Mattaparthi. Unveiling the Transient Protein-Protein Interactions that Modulate the Activity of Estrogen Receptor(ER)-α by Human Lemur Tyrosine Kinase-3 (LMTK3) Domain: An In Silico Study. Emerging Trends in Chemical Sciences, 26-28 February, 2018, Department of Chemistry, Dibrugarh University.

2. Airy Sanjeev and Venkata Satish Kumar Mattaparthi. Potential of Mean Force and Molecular Dynamics study on the transient interactions between α and β synuclein that drive inhibition of α-synuclein aggregation. Emerging Trends in Chemical Sciences, 26-28 February, 2018, Department of Chemistry, Dibrugarh University.

3. Sushmita Pradhan and Venkata Satish Kumar Mattaparthi. Structural Dynamics and Interactions of Xeroderma Pigmentosum complementation group A (XPA98-210) with Damaged DNA. Emerging Trends in Chemical Sciences, 26-28 February, 2018, Department of Chemistry, Dibrugarh University.

4. Himakshi Sarma and Venkata Satish Kumar Mattaparthi. Structure based virtual screening of novel high-affinity ATP competitive inhibitors against Human Lemur Tyrosine Kinase-3 (LMTK3) domain. Research conclave on “Recent Innovations in Science and Engineering 2017” held on 24-26^th March 2017, Organized by NIT Silchar, Assam, India.

5. Sushmita Pradhan and Venkata Satish Kumar Mattaparthi. Structural Dynamics and Interactions of Xeroderma Pigmentosum complementation group A (XPA) with UV- Damaged DNA. Research conclave on “Recent Innovations in Science and Engineering 2017” held on 24-26^th March 2017, Organized by NIT Silchar, Assam, India.

6. Barsha Bharadwaz and Venkata Satish Kumar Mattaparthi Comparison of multiple AMBER force fields in determining the dynamics of an intrinsically disordered protein. Research conclave on “Recent Innovations in Science and Engineering 2017” held on 24-26^th March 2017, Organized by NIT Silchar, Assam, India (Awarded the First Prize in Oral Presentation).

7. Vivek Ghose, Sunanda Paul and Venkata Satish Kumar Mattaparthi. Extended Abstract: Investigation on Physio-chemical and structural properties of Antifreeze Proteins. Research conclave on “Recent Innovations in Science and Engineering 2017” held on 24-26^th March 2017, Organized by NIT Silchar, Assam, India.

8. Sunanda Paul, Airy Sanjeev and Venkata Satish Kumar Mattaparthi. Comparison of Conformational Dynamics of α-Synuclein using multiple AMBER force fields (ff99SB and ff15ipq). Research conclave on “Recent Innovations in Science and Engineering 2017” held on 24-26^th March 2017, Organized by NIT Silchar, Assam, India.

9. Airy Sanjeev, Zeba Firdows and Venkata Satish Kumar Mattaparthi. Potential of Mean Force Study on the Effect of C-terminal Truncation on the Aggregation Propensity of α-Synuclein. Research conclave on “Recent Innovations in Science and Engineering 2017” held on 24-26^th March 2017, Organized by NIT Silchar, Assam, India.

10. Zeba Firdows, Airy Sanjeev and Venkata Satish Kumar Mattaparthi. Potential of Mean Force Study on the Effect of C-terminal Truncation on the Aggregation Propensity of α-Synuclein. Research conclave 2017 held on 16-19^th March 2017, Organized by IIT Guwahati, Assam, India (Awarded the First Prize in Poster Presentation).

11. Mary Dutta and Venkata Satish Kumar Mattaparthi. Structural Characterization of Amyloid β1-42 Dimer: Insights from Molecular Dynamics Simulations. International Conference on Advances in Biotechnology and Biotherapeutics ICABBS-2017 (8th –10th March) Sathyabama University, Chennai, India

12. Himakshi Sarma and Venkata Satish Kumar Mattaparthi. Unveiling the transient Protein-Protein interactions that regulate the activity of Human Lemur Tyrosine Kinase-3 (LMTK3) domain by Cyclin-dependent kinase 5 (CDK5): An in silico study. International Conference on Advances in Biotechnology and Biotherapeutics ICABBS-2017 (8th –10th March) Sathyabama University, Chennai, India

13. Airy Sanjeev and Venkata Satish Kumar Mattaparthi. Investigation on the inter-molecular interactions of the fibril forming segment (non-amyloid-β component) of α-synuclein during dimerization process: A Potential of Mean Force Study. International Conference on Advances in Biotechnology and Biotherapeutics ICABBS-2017 (8th –10th March) Sathyabama University, Chennai, India

14. Airy Sanjeev and Venkata Satish Kumar Mattaparthi. Computational Investigation on the role of γ-synuclein in inhibiting the α-synuclein aggregation. International Conference on Advances in Biotechnology and Biotherapeutics ICABBS-2017 (8th –10th March) Sathyabama University, Chennai, India

15. Barsha Bharadwaz and Venkata Satish Kumar Mattaparthi Comparison of multiple AMBER force fields in determining the dynamics of an intrinsically disordered protein. Symposium on “Accelerating Biology held on 17 – 19 January 2017, Organized by Bioinformatics Group, C-DAC, Pune, India.

16. Himakshi Sarma and Venkata Satish Kumar Mattaparthi. Effect of activation loop phosphorylation on Lemur Tyrosine Kinase 3 (LMTK3) activity: A Molecular Dynamics Simulation Study. Symposium on “Accelerating Biology held on 17 – 19 January 2017, Organized by Bioinformatics Group, C-DAC, Pune, India.

17. Airy Sanjeev, Ravi Kumar Sahu and Venkata Satish Kumar Mattaparthi. Structural characterization of fibril forming segment (non-amyloid-β component) of α-synuclein using Molecular Dynamics simulation. International Conference on Mathematical Modelling, Differential Equations, Scientific Computing & Applications (ICMMDESCA- 2016), March 27-29, 2016, Indian Institute of Technology, Kanpur, India.

18. Airy Sanjeev and Venkata Satish Kumar Mattaparthi. Effect of Tyr to Ala mutations on the inter-molecular interactions of α-synuclein dimer: A Potential of Mean Force Study. International Conference on Mathematical Modelling, Differential Equations, Scientific Computing & Applications (ICMMDESCA- 2016), March 27-29,2016, Indian Institute of Technology, Kanpur, India.

19. Himakshi Sarma and Venkata Satish Kumar Mattaparthi. Human LMTK3 domain: Modelling, Structural Dynamics and Virtual Screening of Novel High Affinity Inhibitors. National Network for Mathematical and Computational Biology (NNMCB), National Meeting, December 27-30, 2015, at IISER Pune.

20. Airy Sanjeev and Venkata Satish Kumar Mattaparthi. An in silico study on the influence of Tyrosine residues on the Structure and Aggregation propensities of α-Synuclein. National Network for Mathematical and Computational Biology (NNMCB), National Meeting, December 27-30, 2015, at IISER Pune.

21. Sangita Sarma and Venkata Satish Kumar Mattaparthi. Identification of luminal endoplasmic reticulum resident protein disulfide isomerase ERp57 as a major target of a small molecule cardioprotective agent in the antithrombotic treatment. National Network for Mathematical and Computational Biology (NNMCB), National Meeting, December 27-30, 2015, at IISER Pune.

22. Mongam Riba and Venkata Satish Kumar Mattaparthi. Identification of effective inhibitors for Human α-fetoprotein to reduce Estrogen Receptor-α positive Breast Cancer by High Throughput Virtual Screening. National Network for Mathematical and Computational Biology (NNMCB), National Meeting, December 27-30, 2015, at IISER Pune.

23. Mary Dutta and Venkata Satish Kumar Mattaparthi. Study on the A1-42 peptide Dimerization process using Molecular Dynamics Simulation. Exploring Mechanisms in Biology: Theory and Experiment. Molecular Graphics Modelling Society (MGMS) Meeting, November 25-27^th, 2015, held at Bioinformatics Institute (BII) A*STAR, Singapore.

24. Airy Sanjeev and Venkata Satish Kumar Mattaparthi. An in silico study on the influence of Tyrosine residues on the Structure and Aggregation propensities of α-Synuclein. International Conference on Molecular Signaling: Recent Trends in Biosciences, November 20-22, 2015, at Department of Zoology NEHU, Shillong.

25. Mary Dutta and Venkata Satish Kumar Mattaparthi. Inhibition of Aβ aggregation in Alzheimer disease using the poly-ion short single stranded DNA: an in silico study. Albany 2015: The 19^th Conversation, June 9-13, 2015 at the Departments of Chemistry and Biological Sciences, State University of New York at Albany, USA.

26. Mary Dutta and Venkata Satish Kumar Mattaparthi. Amyloid β peptide folding simulation to trace out the seed structure responsible for aggregation. International Conference on Mathematical and Computational Biology (ICMCB), February 28- March 3, 2015, at Indian Institute of Technology, Kanpur.

27. Mary Dutta and Venkata Satish Kumar Mattaparthi. Conformational Dynamics of Amyloid beta peptide in water. International Conference on Disease Biology and Therapeutics (ICDBT 2014), 3rd to 5th of December, 2014, at Institute of Advanced study in Science and Technology, Guwahati, Assam.

28. Ankita Deb and Venkata Satish Kumar Mattaparthi. Understanding the structure and Dynamics of the pharmacophore region of alpha Fetoprotein with anti-breast cancer properties using Molecular Dynamics Simulations. International Conference on Mathematical and Computational Biology (ICMCB), February 28- March 3, 2015, at Indian Institute of Technology, Kanpur.

29. Akash Deep Biswas and Venkata Satish Kumar Mattaparthi. Identification of effective mosquito repellents from ocimum tenuiflorum (Tualsi Plant): A Computational Approach. International Conference on Disease Biology and Therapeutics (ICDBT 2014), 3^rd to 5^th of December, 2014, at Institute of Advanced study in Science and Technology, Guwahati, Assam.

30. Mary Dutta and Venkata Satish Kumar Mattaparthi. Inhibition of Amyloid β1-42 peptide aggregation using the poly-ion single stranded short nucleic acid: an In silico approach. National Seminar on Recent advances in Biotechnology research in North-East India: Challenges and Prospects held on November 27-29, 2014 at Tezpur University, Tezpur, Assam.

31. Ankita Deb and Venkata Satish Kumar Mattaparthi. Understanding the structure and Dynamics of the pharmacophore region of alpha Fetoprotein with anti-breast cancer properties using Molecular Dynamics Simulations. National Seminar on Recent advances in Biotechnology research in North-East India: Challenges and Prospects held on November 27-29, 2014 at Tezpur University, Tezpur, Assam.

32. Akash Deep Biswas and Venkata Satish Kumar Mattaparthi. In silico study: Effective inhibitors for Anopheles gambiae odorant receptor (AgOR1).National Seminar on Recent advances in Biotechnology research in North-East India: Challenges and Prospects held on November 27-29, 2014 at Tezpur University, Tezpur, Assam.

33. Akash Deep Biswas and Venkata Satish Kumar Mattaparthi. Computational study of Anopheles gambiae odorant receptor and its repellents: A Molecular Dynamics and docking approach. Lecture Series on Recent advances in Mathematical and Computational Biology held on 18th and 19th of October 2014, jointly organised by the National Network for Mathematical and Computational Biology and the Department of Molecular Biology and Biotechnology, Tezpur University, Tezpur.

34. Ankita Deb and Venkata Satish Kumar Mattaparthi. Understanding the structure and Dynamics of the pharmacophore region of alpha Fetoprotein with anti-breast cancer properties using Molecular Dynamics Simulations. Lecture Series on Recent advances in Mathematical and Computational Biology held on 18th and 19th of October 2014, jointly organised by the National Network for Mathematical and Computational Biology and the Department of Molecular Biology and Biotechnology, Tezpur University, Tezpur.