Bioinformatics Software
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- BioEdit: A biological sequence alignment editor for Windows
- MEGA: An integrated tool for sequence alignment, phylogenetic analysis, testing evolutionary hypotheses, etc.
- PHYLIP: A free package of programs for inferring phylogenies
- RasMol: RasMol is a program for molecular graphics visualisation
- UCSF Chimera: Highly extensible, interactive molecular graphics program
- VMD: VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics
- Modeller: Used for homology or comparative modeling of protein 3D structures
- Autodock: A suite of automated docking tools
- AutoDockTools (ADT): A graphical front-end for setting up and running AutoDock
- NAMD: A parallel molecular dynamics code for large biomolecular systems
- GROMACS: A molecular dynamics package for simulations of proteins, lipids and nucleic acids
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