Bioinformatics Software

    1. BioEdit: A biological sequence alignment editor for Windows
    2. MEGA: An integrated tool for sequence alignment, phylogenetic analysis, testing evolutionary hypotheses, etc.
    3. PHYLIP: A free package of programs for inferring phylogenies
    4. RasMol: RasMol is a program for molecular graphics visualisation
    5. UCSF Chimera: Highly extensible, interactive molecular graphics program
    6. VMD: VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics
    7. Modeller: Used for homology or comparative modeling of protein 3D structures
    8. Autodock: A suite of automated docking tools
    9. AutoDockTools (ADT): A graphical front-end for setting up and running AutoDock
    10. NAMD: A parallel molecular dynamics code for large biomolecular systems
    11. GROMACS: A molecular dynamics package for simulations of proteins, lipids and nucleic acids