Bioinformatics Services (Online Resources)
National Center for Biotechnology Information (NCBI):
Collection public databases for research in computational biology, genome data, and biomedical information
ExPASy:
SIB Bioinformatics Resource Portal
European Bioinformatics Institute's Services
SDSC Biology Workbench:
A web-based tool for biologists
Ensembl
- Software system which produces and maintains automatic annotation on selected eukaryotic genomes
GenePattern
- Analysis workflow tool developed to support multidisciplinary genomic research program
BLAST:
Analysis tool that finds regions of similarity between biological sequences
ClustalW:
ClustalW2 is a general purpose multiple sequence alignment program for DNA & proteins
Primer-BLAST:
Provides primers specific to the PCR template sequence
Oligocalc:
Oligonucleotide Properties Calculator
Sequence Manipulation Suite:
A collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences
In silico PCR amplification
SWISS-MODEL:
A fully automated protein structure homology-modeling server
Directory of computer-aided Drug Design tools
SwissDock:
A free protein ligand docking web service
ClusPro:
Protein-protein docking
PRODRG:
A program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules
HotPOINT:
Hot Spot Prediction Server for Protein Interfaces
Webcutter
- A free, on-line program to help restriction map
NEBcutter
- Provides a DNA sequence analysis to find restriction enzymes sites